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SRX4774010: ddRAD-seq of Labeobarbus aeneus: muscle sample
1 ILLUMINA (Illumina HiSeq 2000) run: 1.9M spots, 332M bases, 220.3Mb downloads

Design: The sequencing company (BGI, Hong Kong) followed the protocol of Peterson et al. 2012 (double-digest RAD sequencing) using the restriction enzymes NlaIII and MluCI. An additional size-selection step of 300-500 bp was employed.
Submitted by: University of Pretoria
Study: Investigating hybridization and introgression of the Orange-Vaal yellowfish species
show Abstracthide Abstract
The Orange-Vaal smallmouth yellowfish (Labeobarbus aeneus) and Orange-Vaal largemouth yellowfish (L. kimberleyensis) occur in sympatry for much of their distribution. The two species are different behaviourally, ecologically and morphologically. Despite these differences there have been several reports of potential hybridization events, particularly in man-made environments such as dams. However, previous attempts to determine whether hybridization is occurring between these species using morphology, allozymes and mitochondrial DNA were inconclusive. In this study we sequence samples from both species to resolve whether hybridization is occurring between these species, and simultaneously make use of these data to investigate the applicability of mining mitochondrial signal from NGS data.
Sample:
SAMN10141658 • SRS3854553 • All experiments • All runs
Library:
Name: 1_LaO08
Instrument: Illumina HiSeq 2000
Strategy: RAD-Seq
Source: GENOMIC
Selection: Restriction Digest
Layout: PAIRED
Runs: 1 run, 1.9M spots, 332M bases, 220.3Mb
Run# of Spots# of BasesSizePublished
SRR79388081,897,266332M220.3Mb2018-12-01

ID:
6458215

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